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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs6766489 chr3:101021978 G/C 1.63E-5 404 15.67 14.73 11.7 KM Plot
LGG rs67696450 chr10:1090684 C/T 1.84E-7 401 15.93 14.8 8.97 KM Plot
LGG rs6773008 chr3:100926164 T/A 5.24E-5 402 15.72 14.93 12.77 KM Plot
LGG rs6776531 chr3:38947486 A/G 4.14E-5 407 14.9 16.77 11.63 KM Plot
LGG rs67769245 chr20:3347636 C/T 3.52E-5 405 15.93 12.27 6.28 KM Plot
LGG rs6777400 chr3:183352334 A/G 0.000214 407 9.85 16.27 15.25 KM Plot
LGG rs67898819 chr2:25313931 C/A 0.000128 399 15.17 15.32 4.68 KM Plot
LGG rs6796486 chr3:101039581 C/T 1.36E-5 407 11.7 15.17 15.63 KM Plot
LGG rs6828521 chr4:84476361 A/G 0 385 15.18 17.9 5.17 KM Plot
LGG rs6830485 chr4:108963382 A/G 3.64E-5 405 15.57 15.03 4.35 KM Plot
LGG rs6832702 chr4:108951058 G/C 3.41E-5 407 4.35 15.03 15.57 KM Plot
LGG rs6859694 chr5:156008782 T/G 2.24E-5 406 16.33 13.87 15.33 KM Plot
LGG rs6860632 chr5:92804634 C/G 2.45E-5 407 15.17 16.6 18.57 KM Plot
LGG rs6866771 chr5:92835972 C/T 6.93E-6 407 15.17 16.17 18.57 KM Plot
LGG rs6869588 chr5:94029492 A/G 4.32E-5 407 14.78 17.63 9.8 KM Plot